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I'm Fatima and you're probably wondering who in the world am I. I am who you're not.

I'm currently a sophomore student at Manila Science High School.

I'm bad. Bad meaning good.

I'm introverted, stubborn and generally apathetic towards the matters of this world that don't concern me.

"The quick brown fox jumped over the lazy dog." is my favorite sentence.

I hate math and all that nonsensical things that relate with it. I don't think we should waste our time on something as mind-boggling as math, I mean, in a million years, we're all going to be annihilated by a giant black hole anyways. So why bother?

But I love English. And Biology too now that I mention it.

I'm bitter/cynical/
pessimistic/skeptical/
mocking/tempestuous.
Whatever you like to call it. Why you ask? Well, why not?

There's a fine line between genius and insanity, and I constantly treaded that tightrope.

I am apparently suffering from my Borderline Personality and ADHD. What fun. You should try it.

P.S. Don't worry. I don't hate you; I just don't particularly like you.

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Saturday, January 13, 2007

The Five Kingdoms.

Let's review about the 5 kingdoms so I suggest you go to THIS page. It summarized the different characteristics of the 5 kingdoms so it's easier for us to understand and remember. :)

Now, you know.

[HAHA. Baliw. =P]

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gaysha_rawrr learned biological concepts @6:27 AM

Monerans

Monerans are also called prokaryotes. They are the simplest, singular cell life forms that exist. They are most often called bacteria and they do not have a nucleus.

The Kingdom Monera consists entirely of the bacteria. All organism in the Kingdom Monera are prokaryotes. They lack nuclei and organelles and most of their cell wall are made of peptidoglycan which is used for protection. They also have pili which is used for attachment. Most utilize flagella for movement. They reproduce by splitting in two. They absorb nutrients from outside their bodies. Some monerans cause diseases but others are helpful to people.

Types of bacteria according to shape:

Cocci
- spherical



Bacilli
- rod-shaped



Spirilium
- spiral



Types of bacteria according to location of flagella:

Polytrichous



Peritrichous



Lophotrichous



Definition of terms:
  • transduction - movement of DNA from bacteria to a virus
  • transformation - movement of DNA from bacteria to a dead bacteria
  • eubacteria - bacteria that lives in an environment with a favorable condition
  • archaebacteria - bacteria that lives in an environment with harsh or extreme conditions
ARCHAEBACTERIA:
  1. thermophyles - live in extreme heat and extremely acidic environment
  2. halophyles - live in extreme salty environment
  3. methanogens - produces methane [CH4]
  4. chemosynthesizers - sulfur reducers

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gaysha_rawrr learned biological concepts @5:49 AM

Friday, January 12, 2007

Geologic Timescale



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gaysha_rawrr learned biological concepts @11:10 PM

Evidences of Evolution

The Nobel Prize winning scientist Linus Pauling aptly described science as the search for truth. Science does this by continuously comparing its theories objectively with evidence in the natural world. When theories no longer conform to the evidence, they are modified or rejected in favor of new theories that do conform. In other words, science constantly tries to prove its assumptions to be false and rejects implausible explanations. In this way, scientific knowledge and understanding grow over time. Religious explanations for the order of things are not science because they are based primarily on faith and do not subject themselves to be objectively falsified. Because of this fundamental difference in the approach to understanding our natural world, the U.S. Supreme Court in effect decided in 1987 that the Biblically based "creation science" is not a science and cannot be taught as such in public schools as an alternative or in addition to the mainstream evolutionary theory of the biological sciences. However, religious creation stories and the idea of "intelligent design" can be taught in philosophy, religion, or history courses. Religion and Science provide different approaches to knowledge. It is important to understand both.

How Do We Know That Evolution Has Occurred?

The evidence for evolution has primarily come from four sources:
1. the fossil record of change in earlier species
2. the chemical and anatomical similarities of related life forms
3. the geographic distribution of related species
4. the recorded genetic changes in living organisms over many generations

The Fossil Record


Remains of animals and plants found in sedimentary rock deposits give us an indisputable record of past changes through time. This evidence attests to the fact that there has been a tremendous variety of living things. Some extinct species had traits that were transitional between major groups of organisms. Their existence confirms that species are not fixed but can evolve into other species over time.

The evidence also shows that what have appeared to be gaps in the fossil record are due to incomplete data collection. The more that we learn about the evolution of specific species lines, the more that these so-called gaps or "missing links in the chain of evolution" are filled with transitional fossil specimens.

Chemical and Anatomical Similarities

Living things on earth are fundamentally similar in the way that their basic anatomical structures develop and in their chemical compositions. No matter whether they are simple single celled protozoa or highly complex organisms with billions of cells, they all begin as single cells that reproduce themselves by similar division processes. After a limited life span, they also all grow old and die.

All living things on earth share the ability to create complex molecules out of carbon and a few other elements. In fact, 99% of the proteins, carbohydrates, fats, and other molecules of living things are made from only 6 of the 92 most common elements. This is not a mere coincidence.

All plants and animals receive their specific characteristics from their parents by inheriting particular combinations of genes. Molecular biologists have discovered that genes are, in fact, segments of DNA molecules in our cells.

All of the tens of thousands of types of proteins in living things are made of only 20 kinds of amino acids. Despite the great diversity of life on our planet, the simple language of the DNA code is the same for all living things. This is evidence of the fundamental molecular unity of life.

In addition to molecular similarities, most living things are alike in that they either get the energy needed for growth, repair, and reproduction directly from sunlight, by photosynthesis, or they get it indirectly by consuming green plants and other organisms that eat plants.

Many groups of species share the same types of body structures because they inherited them from a common ancestor that had them. This is the case with the vertebrates which are the animals that have internal skeletons. The arms of humans, the forelegs of dogs and cats, the wings of birds, and the flippers of whales and seals all have the same types of bones (humerus, radius, and ulna) because they have retained these traits of their shared common ancient vertebrate ancestor.

All of these major chemical and anatomical similarities between living things can be most logically accounted for by assuming that they either share a common ancestry or they came into existence as a result of similar natural processes. These facts make it difficult to accept a theory of special and independent creation of different species.

Geographic Distribution of Related Species [Biogeography]

Another clue to patterns of past evolution is found in the natural geographic distribution of related species. It is clear that major isolated land areas and island groups often evolved their own distinct plant and animal communities. For instance, before humans arrived 60-40,000 years ago, Australia had more than 100 species of kangaroos, koalas, and other marsupials but none of the more advanced terrestrial placental mammals such as dogs, cats, bears, horses. Land mammals were entirely absent from the even more isolated islands that make up Hawaii and New Zealand. Each of these places had a great number of plant, insect, and bird species that were found nowhere else in the world. The most likely explanation for the existence of Australia's, New Zealand's, and Hawaii's mostly unique biotic environments is that the life forms in these areas have been evolving in isolation from the rest of the world for millions of years.

Genetic Changes Over Generations

The earth's environments are constantly changing, usually in subtle and complex ways. When the changes are so great as to go beyond what most members of a population of organisms can tolerate, widespread death occurs. As Charles Darwin observed, however, not all individuals always perish. Fortunately, natural populations have genetic diversity. Those individuals whose characteristics allow them to survive an environmental crisis likely will be the only ones able to reproduce. Subsequently, their traits will be more common in the next generation--evolution of the population will have occurred.

This process of natural selection resulting in evolution can be easily demonstrated over a 24 hour period in a laboratory Petri dish of bacteria living in a nutrient medium. When a lethal dose of antibiotic is added, there will be a mass die-off. However, a few of the bacteria usually are immune and survive. The next generation is mostly immune because they have inherited immunity from the survivors. That is the case with the purple bacteria in the Petri dishes shown below--the bacteria population has evolved.

Taken from :)

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gaysha_rawrr learned biological concepts @8:43 PM

Evolution

Evolution is the process in which inherited traits become more or less prevalent in a population over successive generations. Over time, this process can lead to speciation, the development of new species from existing ones. All extant organisms are related by common descent, having evolved over billions of years of cumulative genetic changes from a single ancestor.

The basic mechanisms that produce evolutionary change are natural selection and genetic drift; these two mechanisms act on the genetic variation caused by mutation, genetic recombination and gene flow. Through genetic drift, the frequency of heritable traits changes randomly. Through natural selection, organisms with traits that help them to survive and reproduce will have more offspring, passing these beneficial traits on to the next generation. This leads to advantageous traits becoming more common in each generation, while disadvantageous traits become rarer. Given enough time, this passive process can result in varied adaptations to changing environmental conditions.

The theory of evolution by natural selection was first propounded in detail in Charles Darwin's 1859 book On the Origin of Species. In the 1930s, Darwinian natural selection was combined with the theory of Mendelian heredity to form the modern evolutionary synthesis, also known as "Neo-Darwinism". The modern synthesis describes evolution as a change in the frequency of different versions of genes, known as alleles, within a population from one generation to the next. With its enormous explanatory and predictive power, this theory has become the central organizing principle of modern biology, relating directly to topics such as the origin of antibiotic resistance in bacteria, eusociality in insects, and the biodiversity of Earth's ecosystem.

The Great Chain of Being



The great chain of being or scala naturæ is a classical and western medieval conception of the order of the universe, whose chief characteristic is a strict hierarchical system.

It is a conception of the world's structure that was accepted, and unquestioned, by most educated men from the time of Lucretius until the Copernican and Darwinian revolution and the ultimate flowering of the Renaissance. The chain of being is composed of a great number of hierarchal links, from the most basic and foundational elements up through the very highest perfection, in other words, God, or the Prime Mover.

God, and beneath him the angels, both existing wholly in spirit form, sit at the top of the ladder. Earthly flesh is fallible and ever-changing: mutable. Spirit, however, is unchanging and permanent. This sense of permanence is crucial to understanding this conception of reality. One does not abandon one's place in the chain; it is not only unthinkable, but generally impossible. (One exception might be in the realm of alchemy, where alchemists attempted to transmute base elements, such as lead, into higher elements, either silver, or more often, gold—the highest element.)

In the natural order, earth (rock) is at the bottom of the chain; these elements possess only the attribute of existence. Moving on up the chain, each succeeding link contains the positive attributes of the previous link, and adds (at least) one other. Rocks, as above, possess only existence; the next link up, plants, possess life and existence. Beasts add not only motion, but appetite as well.

Man is a special instance in this conception. He is both mortal flesh, as those below him, and also spirit. In this dichotomy, the struggle between flesh and spirit becomes a moral one. The way of the spirit is higher, more noble; it brings one closer to God. The desires of the flesh drag one down. The Christian fall of Lucifer is especially terrible, because that angel is wholly spirit, who yet defies God, the ultimate perfection.

Theory of Catastrophism by Georges Cuvier

In geology, the doctrine that at intervals in the earth's history all living things have been destroyed by cataclysms (e.g., floods or earthquakes) and replaced by an entirely different population. During these cataclysms the features of the earth's surface, such as mountains and valleys, were formed. The theory, popularly accepted from the earliest times, was attacked in the late 18th cent., notably by James Hutton, who may be regarded as the precursor of the opposite doctrine of uniformitarianism.

Catastrophism, however, was more easily correlated with religious doctrines (e.g., the Mosaic account of the Flood) and remained for some time the interpretation of the earth's history accepted by the great majority of geologists. It was systematized and defended by the Frenchman Georges Cuvier, whose position as the greatest geologist of his day easily overbore all opposition. In the 19th cent., it was attacked by George Poulett Scrope and especially by Sir Charles Lyell, under whose influence the contrary doctrine gradually became more popular. Recent theories of meteorite, asteroid, or comet impacts triggering mass extinctions can be interpreted as a revival of catastrophism.

MORE INFO.


Use and Disuse by Jean Lamarck

The Lamarckian evolutionary idea that if an animal often used a particular trait or characteristic, that trait or characteristic would become more pronounced. Alternately, if a trait went unused, it would become less pronounced.



















Natural Selection by Charles Darwin

Natural selection is the biological theory that explains why living creatures seem to match their environmental niches so well – the process by which individual organisms with favorable traits are more likely to survive and reproduce than those with unfavorable traits. Insofar as there is genetic variability for the trait under selection, the genotypes associated with the favored traits will increase in frequency in the next generation. Given enough time, this passive process results in adaptations and speciation (see evolution).

Natural selection is one of the cornerstones of modern biology. The term was introduced by Charles Darwin in his 1859 book The Origin of Species, by analogy with artificial selection, by which a farmer selects his breeding stock.

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gaysha_rawrr learned biological concepts @5:45 PM

History of Genetics

Genetics (from the Greek genno γεννώ= give birth) is the science of genes, heredity, and the variation of organisms. The word "genetics" was first suggested to describe the study of inheritance and the science of variation by the prominent British scientist William Bateson in a personal letter to Adam Sedgwick, dated April 18, 1905. Bateson first used the term "genetics" publicly at the Third International Conference on Plant Hybridization (London, England) in 1906.

Heredity and variations form the basis of genetics. Humans applied knowledge of genetics in prehistory with the domestication and breeding of plants and animals. In modern research, genetics provides important tools for the investigation of the function of a particular gene, e.g., analysis of genetic interactions. Within organisms, genetic information generally is carried in chromosomes, where it is represented in the chemical structure of particular DNA (deoxyribonucleic acid) molecules.

Genes encode the information necessary for synthesizing the amino-acid sequences in proteins, which in turn play a large role in determining the final phenotype, or physical appearance, of the organism. In diploid organisms, a dominant allele on one chromosome will mask the expression of a recessive gene on the other.

The phrase to code for is often used to mean a gene contains the instructions about how to build a particular protein, as in the gene codes for the protein. The "one gene, one protein" concept is now known to be simplistic. For example, a single gene may produce multiple products, depending on how its transcription is regulated. Genes code for the nucleotide sequences in mRNA, tRNA and rRNA, required for protein synthesis.

Genetics determines much (but not all) of the appearance of organisms, including humans, and possibly how they act. Environmental differences and random factors also play a part. Monozygotic ("identical") twins, a clone resulting from the early splitting of an embryo, have the same DNA, but different personalities and fingerprints. Genetically-identical plants grown in colder climates incorporate shorter and less-saturated fatty acids to avoid stiffness.

For more information, visit THIS SITE.

[All information taken from Wikipedia.]

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gaysha_rawrr learned biological concepts @5:42 PM

Chromosomes and Inheritance
  • Genes are units of information about heritable traits. The genes of eukaryotic cells are distributed among a number of chromosomes. Each gene has its own location - a gene locus - in one type of chromosome.
  • Any cell with a diploid chromosome number has inherited pairs of homologous chromosomes. All but one pair are identical in length, shape, and gene sequence. The single exception is a pairing of nonidentical sex chromosomes, such as X with Y. The two members of a pair of homologous chromosomes interact and segregate from each other during meiosis.
  • A gene at one locus may have the same form or a slightly different one compared to its partner gene on the homologous chromosome. When considering a population as a whole, which forms are inherited usually varies from one individual to the next.
  • All the different molecular forms of a gene that are possible at a given locus are called alleles. New alleles arise only through mutation.
  • A wild-type allele is the most common form of a gene, either in a natural population or in a standard, laboratory-bred strain of species. Any one of the less common forms of a gene is a mutant allele.
  • Genes on the same chromosome are physically linked together. The farther apart two linked genes are, the more vulnerable they are to crossing over. By this event, homologous chromosomes exchange corresponding segments.
  • Crossing over results in genetic recombination. The term refers to nonparental combinations of alleles in gametes, then in offspring.
  • Independent assortment refers to the random alignment of each pair of homologous chromosomes at metaphase 1 of meiosis. It results in nonparental combination of alleles in gametes and offspring.
  • On rare occasions, the structure of chromosomes changes abnormally during mitosis or meiosis. So does the parental chromosome number.

Remember:

Diploid cells have pairs of genes, on pairs of homologous chromosomes. At each gene locus, the alleles may be identical or non identical.

Crossing over and other events during meiosis give offspring new combination of alleles and parental chromosomes.

Abnormal events during meiosis or mitosis can change the structure and number of chromosomes.

Autosomes are the pairs of chromosomes that are the same in males and females of a species. One other pair, the sex chromosomes govern the sex of a new individual.

[All information taken from Biology Concepts and Applications by Cecie Starr Fifth Edition]

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gaysha_rawrr learned biological concepts @5:11 PM